Introduction | Installation | Core pipeline | (Optional) Decomposing gene sets into coexpressed subsets | Scoring | Training ML models | Recommendations | Using M-scores to extract disease-relevant information | Build the reference data object | Calculate the reference M-scores | Identify key gene sets | Calculate the M-scores without healthy controls | Data licenses | Session info | References

Package contents | Sources | Session info

Previous steps | Reading .idat files | Cell type heterogeneity correction | Step 1: Ranking CpGs probes | Paired analysis | Step 2: Searching DMRs in predefined regions | Step 3: Plotting the results | Integrating methylation and expression data | Session info | References